References
Arrhenius, G., B.Sales, S.Mojzsis, and T.Lee1997. “Entropy and Charge in Molecular Evolution—The Case of Phosphate. Journal of Theoretical Biology 187:503–22.
Bachmann, P. A., P. L.Luisi, and J.Lang1992. “Autocatalytic Self‐replication Micelles as Modes for Prebiotic Structures. Science 357:57–58.
Bada, Jeffrey L.2004. “How Life Began on Earth: A status Report. Earth and Planetary Science Letters 226:1–15.
Bada, J. L., and A.Lazcano2003. “Prebiotic Soup—Revisiting the Miller Experiment. Science 300:745–46.
Baltscheffsky, M., and H.Baltscheffsky1992. “Inorganic pyrophosphate and inorganic pyrophosphatases .” In Molecular Mechanisms in Bioenergetics, ed. L.Ernster, 331–48. Amsterdam : Elsevier.
Barbour, Ian2005. “Evolution and Process Thought. Theology and Science 3:161–78.
Barth, Karl, and E.Brunner1947. Natural Theology London : SCM Press.
Bar‐Yam, Yaneer1997. Dynamics of Complex Systems Reading , Mass. : Perseus.
Behe, Michael J.1996. Darwins Black Box: The Biochemical Challenge to Evolution New York : Free Press.
Benner, Steven A., A.Ricardo, and M. A.Carrigan2004. “Is There a Common Chemical Model for Life in the UniverseCurrent Opinion in Chemical Biology 8:672–89.
Bernal, J. D.1951. The Physical Basis of Life London : Routledge and Kegan Paul.
Bernal, J. D., ed 1967. The Origin of Life Cleveland : World.
Bradley, Walter L.2004. “Information, Entropy, and the Origin of Life . In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse, 331–51. Cambridge : Cambridge Univ. Press.
Brooks, D. R., and E. O.Wiley1986. Evolution as Entropy: Toward a Unified Theory of Biology Chicago : Univ. of Chicago Press.
Camazine, S., J‐L.Deneubourg, N. R.Franks, J.Sneyd, G.Theraulaz, and E.Bonabeau2001. Self‐Organization in Biological Systems Princeton , N.J. : Princeton Univ. Press.
Carter, C. W., and J.Kraut1974. “A Proposed Model for Interaction of Polypeptides with RNA. Proceedings of the National Academy of Science USA 71:283–87.
Casti, J. L.1994. Complexification: Explaining a Paradoxical World through the Science of Surprise New York : HarperCollins.
Cech, T. R.1986. “Bootstrapping model of the origin of life. BioSystems 15:209–19.
Cech, T. R.1987. “The Chemistry of Self‐splicing RNA and RNA Enzymes. Science 236: 4360–63.
Clayton, Philip2004. Mind and Emergence: From Quantum to Consciousness Oxford : Oxford Univ. Press.
Clayton, Philip2006. “Biology, Directionality, and God: Getting Clear on the Stakes for Religion‐Science Discussion. Theology and Science 4:121–27.
Cobbe, Frances P.1872. Darwinism in Morals and Other Essays London : Williams and Norgate.
Conway Morris, Simon2003. Life's Solutions: Inevitable Humans in a Lonely Universe Cambridge : Cambridge Univ. Press.
Corning, Peter A.2002. “The Re‐emergence of Emergence': A Venerable Concept in Search of a Theory. Complexity 7 (6): 18–30.
Corning, Peter A.2003. Nature's Magic: Synergy in Evolution and the Fate of Humankind Cambridge : Cambridge Univ. Press.
Darwin, Charles [1859] 1964. On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. Introduction by Ernst Mayr. Cambridge , Mass. : Harvard Univ. Press.
Davies, Paul1998. “Teleology without Teleology: Purpose through Emergent Complexity .” In Evolutionary and Molecular Biology: Scientific Perspectives on Divine Action, ed. R. J.Russell, W. R.Stoeger, and F. J.Ayala, 151–62. Vatican City : Vatican Observatory Publications.
Davies, Paul1999. The Fifth Miracle: The Search for the Origin and Meaning of Life New York : Simon and Schuster.
Davies, Paul2004. “Emergent Complexity, Teleology, and the Arrow of Time .” In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse, 191–209. Cambridge : Cambridge Univ. Press.
Dawkins, Richard1976. The Selfish Gene Oxford : Oxford Univ. Press.
Davies, Paul1989. The Selfish Gene: New Edition Oxford : Oxford Univ. Press.
Deacon, Terrence W.2003. “The Hierarchic Logic of Emergence: Untangling the Interdependence of Evolution and Self‐organization .” In Evolution and Learning: The Baldwin Effect Reconsidered, ed. B. H.Weber and D. J.Depew, 273–308. Cambridge : MIT Press.
Deacon, Terrence W.2003. “The Hierarchic Logic of Emergence: Untangling the Interdependence of Evolution and Self‐organization.” In Evolution and Learning: The Baldwin Effect Reconsidered, ed. B. H.Weber and D. J.Depew 2006. “Reciprocal Linkage between Self‐organizing Processes Is Sufficient for Self‐reproduction and Evolvability.” Biological Theory 1 (2): 1–14.
Deamer, David W.1992. “Polycyclic aromatic hydrocarbons: Primitive pigment systems in the prebiotic environment. Advances in Space Research 12:1–4.
Deamer, D. W., and R. M.Pashley1989. “Amphiphilic components of the Murchison carbonaceous chondrite: Surface properties and membrane formation. Origin of Life and Evolution of the Biosphere 19:21–38.
Deamer, D. W., J. P.Dworkin, S. A.Sandford, M. P.Bernstein, and L. J.Allamandola2002. “The first cell membranes. Astrobiology 2:371–81.
Dembski, William A.1998. The Design Inference: Eliminating Chance through Small Probabilities Cambridge : Cambridge Univ. Press.
Dennett, Daniel1995. Darwins Dangerous Idea: Evolution and the Meanings of Life New York : Simon and Schuster.
Depew, David J., and Bruce H.Weber1995. Darwinism Evolving: Systems Dynamics and the Genealogy of Natural Selection Cambridge : MIT Press.
Desmond, Adrian1989. The Politics of Evolution Chicago : Univ. of Chicago Press.
Dewar, R.2003. “Information theory explanation of the fluctuation theorem, maximum entropy production and self‐organized criticality in non‐equilibrium stationary states. Journal of Physics A: Mathematical and General 36:631–41.
Fox, Ronald F.1982. Biological Energy Transduction: The Oroboros New York : Wiley.
Fox, Ronald F.1988. Energy and the Evolution of Life New York : Freeman.
Fox, Ronald F.1997. “The Origins of Life: What One Needs to Know. Zygon: Journal of Religion and Science 32:393–406.
Fox, Sidney W.1965. “Simulated natural experiments in spontaneous organization of morphological units from proteins .” In The Origins of Prebiological Systems and Their Molecular Matrices, ed. W. W.Fox, 361–82. New York : Academic Press.
Fox, Sidney W.1988. The Emergence of Life New York : Academic Press.
Fox, Sidney W., and KlausDose1972. Molecular Evolution and the Origin of Life New York : Freeman.
Fry, I.2000. The Emergence of Life on Earth: A Historical and Scientific Overview New Brunswick , N.J. : Rutgers Univ. Press.
Gesteland, R. F., and J. F.Atkins1993. The RNA World: The Nature of Modern RNA Suggests a Prebiotic RNA World Cold Spring Harbor , Mass. : Cold Spring Harbor Press.
Haldane, J. B. S. [1929] 1967. “The Origin of Life, Rationalist Animal” Reprinted in The Origin of Life, ed. J. D.Bernal, 242–49. Cleveland , Ohio : World.
Harper, Charles L.Jr2005. “What Does a Slug Know about Mozart? Introducing the Ontological Multiverse .” In Spiritual Information, ed. C. L.HarperJr, 45–51. Philadelphia and London : Templeton Foundation Press.
Haught, John F.2000. God After Darwin: A Theology of Evolution Boulder , Colo. : Westview.
Haught, John F.2003. Deeper Than Darwin Boulder , Colo. : Westview.
Haught, John F.2004. “Darwin, Design, and Divine Providence .” In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse, 229–45. Cambridge : Cambridge Univ. Press.
Haught, John F.2004. “Darwin, Design, and Divine Providence .” In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse 2006, Is Nature Enough? Meaning and Truth in the Age of Science New York : Cambridge Univ. Press.
Henderson, Lawrence1917. The Order of Nature Cambridge : Harvard Univ. Press.
Imai, E., EtAl1999. “Elongation of Oligopeptides in a Simulated Submarine Hydrothermal System. Science 283:831–33.
Joyce, G. F., and L. E.Orgel1993. “Prospects for Understanding the Origin of the RNA World . In The RNA World, ed. R. F.Gesteland and J. F.Atkins, 1–25. Cold Spring Harbor , Mass. : Cold Spring Harbor Press.
Kauffman, Stuart A.1993. The Origins of Order: Self‐Organization and Selection in Evolution New York : Oxford Univ. Press.
Kauffman, Stuart A.2000. Investigations New York : Oxford Univ. Press.
Kauffman, Stuart A.2004. “Autonomous Agents .” In Science and Ultimate Reality: Quantum Theory Cosmology and Complexity, ed. J. D.Barrow, P. C. W.Davies, and C. L.HarperJr, 654–66. Cambridge : Cambridge Univ. Press.
Kleidon, A., and R. D.Lorenz2005. Non‐equilibrium Thermodynamics and the Production of Entropy: Life, Earth, and Beyond Heidelberg : Springer.
Krüppers, Bernd‐Olaf1990. Information and the Origin of Life Cambridge : MIT Press.
Kumar, J. K., and J. S.Oliver2002. “Proximity effects in monolayer films: Kinetic analysis of amide bond formation in the air‐water interface using proton NMR spectroscopy. Journal of the American Chemical Society 124:11307–14.
Lahav, N.1999. Biogenesis: Theories of Life's Origin New York : Oxford Univ. Press.
Lane, Nick2006. Power, Sex, Suicide: Mitochondria and the Meaning of Life Oxford : Oxford Univ. Press.
Laughlin, Robert B.2005. A Different Universe: Reinventing Physics from the Bottom Down New York : Basic Books.
Leman, L., L.Orgel, and M. R.Ghadiri2004. “Carbonylsulfide‐mediated Prebiotic Formation of Peptides. Science 306:283–86.
Liebman, S. A., R. A.Pesce‐Rodriguez, and C. N.Matthews1995. “Organic analysis of hydrogen cyanide polymers: Prebiotic and extraterrestrial chemistry. Advances in Space Research 15 (3): 71–80.
Luisi, Pier L.2006. The Emergence of Life: From Chemical Origins to Synthetic Biology Cambridge : Cambridge Univ. Press.
Lurquin, Paul F.2003. The Origins of Life and the Universe New York : Columbia Univ. Press.
Martin, William, and Michael TRussell2003. “On the origins of cells: A hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. Philosophical Transactions of the Royal Society of London (Series B) 358:59–85.
Matthews, C. N., and R. E.Moser1967. “Peptide Synthesis from Hydrogen Cyanide and Water. Nature 215:1230–34.
Meyer, S. C.2003. “DNA and the Origin of Life: Information, Specification, and Explanation .” In Darwinism, Design, and Public Education, ed. J. H.Campbell and S. C.Meyer, 223–85. Lansing : Michigan State Univ. Press.
Meyer, S. C.2004. “The Origin of Biological Information and the Higher Taxonomic Categories . Proceedings of the Biological Society of Washington117 (2): 213–39.
Miller, Keith B.2003. “Common Descent, Transitional Forms, and the Fossil Record . In Perspectives on an Evolving Creation, 152–81. Grand Rapids , Mich. : Eerdmans.
Miller, Kenneth R.1999. Finding Darwins God: A Scientist's Search for Common Ground between God and Evolution New York : HarperCollins.
Miller, Stanley L.1953. “A Production of Amino Acids under Possible Primitive Earth Conditions. Science 117:528–29.
Minard, R. D., P. G.Hatcher, R. C.Gourley, and C. N.Matthews1998. “Structural Investigations of Hydrogen Cyanide Polymers: New Insights Using TMAH Thermochemolysis/GC‐MS. Origins of Life and Evolution of the Biosphere 28:461–73.
Mitchell, P. D.1961. “Coupling of Phosphorylation to Electron and Hydrogen Transfer by a Chemiosmotic Type of Mechanism. Nature 191:144–48.
Morowitz, H. J.1992. Beginnings of Cellular Life: Metabolism Recapitulates Biogenesis New Haven : Yale Univ. Press.
Morowitz, H. J.2002. The Emergence of Everything: How the World Became Complex New York : Oxford Univ. Press.
Morowitz, H., D. W.Deamer, and TSmith1991. “Biogenesis as an evolutionary process. Journal of Molecular Evolution 33:207–8.
Needham, Joseph1936. Order and Life New Haven , Conn. : Yale Univ. Press.
Oparin, Alexander I.1924. Proiskhozhdenie zhizy. Moscow : Moskovski Rabochii. (English trans. reprinted as The Origin of Life in Bernal 1967, 199–241.).
Oparin, Alexander I.1938. The Origin of Life London : Macmillan.
Orgel, L. E.1968. “Evolution of the genetic apparatus. Journal of Molecular Biology 38:381–93.
Orgel, L. E.1992. “Molecular Replication. Nature 358:203–9.
Oró, J.1961. “Mechanism of Synthesis of Adenine from Hydrogen Cyanide under Possible Primitive Earth Conditions. Nature 191:1193–94.
Ourisson, G., and Y.Nakatani1994. “The Terpenoid Theory of the Origin of Cellular Life: The Evolution of Terpenoids to Cholesterol. Current Biology 1:11–23.
Pagels, H. R.1988. The Dreams of Reason: The Computer and the Rise of the Sciences of Complexity New York : Simon and Schuster.
Peacocke, Arthur R.1983. An Introduction to the Physical Chemistry of Biological Organization Oxford : Oxford Univ. Press.
Polkinghorne, John2001. The Works of Love: Creation as Kenosis Grand Rapids , Mich. : Eerdmans.
Polkinghorne, John2004. “The Inbuilt Potentiality of Creation .” In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse, 246–60. Cambridge : Cambridge Univ. Press.
Prebble, J., and B.Weber2003. Wandering in the Gardens of the Mind: Peter Mitchell and the Making of Glynn New York : Oxford Univ. Press.
Prigogine, Ilya1962. Introduction to Non‐Equilibrium Thermodynamics New York : Wiley Interscience.
Prigogine, Ilya1980. From Being to Becoming: Time and Complexity in the Physical Sciences New York : Freeman.
Prigogine, Ilya1997. The End of Certainty: Time, Chaos, and the New Laws of Nature New York : Free Press.
Prigogine, Ilya, and IsabelleStengers1984. Order Out of Chaos: Man's New Dialogue with Nature New York : Bantam.
Rollins, James2006. Black Order New York : HarperCollins.
Royce, Josiah1904. Herbert Spencer: An Estimate and Review New York : Collier.
Ruse, Michael2001. Can a Darwinian Be a Christian? The Relationship between Science and Religion Cambridge : Cambridge Univ. Press.
Ruse, Michael2006. Darwinism and Its Discontents New York : Cambridge Univ. Press.
Schneider, Eric, and DorianSagan2005. Into the Cool: Energy Flow, Thermodynamics, and Life Chicago : Univ. of Chicago Press.
Schopf, J. W.1983. Earth's Earliest Biosphere: Its Origin and Evolution Princeton , N.J. : Princeton Univ. Press.
Schwartz, A. W.1997. “Speculation on the RNA Precursor Problem. Journal of Theoretical Biology 187:523–27.
Scott, Eugenie C.2004. Evolution vs. Creationism: An Introduction Westport , Conn. : Greenwood.
Silberstein, Michael2002. “Reduction, Emergence and Explanation .” In The Blackwell Guide to the Philosophy of Science, ed. P.Machamer and M.Silberstein, 80–107. Malden, Mass., and Oxford : Blackwell.
Spencer, Herbert1864. The Principles of Biology London : Williams and Norgate.
Stewart, Ian2003. “The Second Law of Gravitics and the Fourth Law of Thermodynamics .” In From Complexity to Life: On the Emergence of Life and Meaning, ed. Niels H.Gregersen, 114–50. New York : Oxford Univ. Press.
Strick, J. E.2000. Sparks of Life: Darwinism and the Victorian Debates over Spontaneous Generation Cambridge , Mass. : Harvard Univ. Press.
Swenson, Ron1989. “Emergent Attractors and the Law of Maximum Entropy Production: Foundations to a Theory of General Evolution. Systems Research 6:187–97.
Taylor, M. C.2003. The Moment of Complexity: Emerging Network Cultures Chicago : Univ. of Chicago Press.
Ulanowicz, Robert E.1997. Ecology: The Ascendant Perspective New York : Columbia Univ. Press.
Ulanowicz, Robert E.2002. “Ecology, a Dialog between the Quick and the Dead. Emergence 4 (1): 34–52.
Ulanowicz, Robert E.2004. “Ecosystem Dynamics: A Natural Middle. Theology and Science 2 (2): 231–53.
Wächterhäuser, G.1988a. “Before Enzymes and Templates: Theory of Surface Metabolism. Microbiological Reviews 52:452–84.
Wächterhäuser, G.1988b. “Pyrite Formation, the First Energy Source for Life: A Hypothesis. Systematic and Applied Microbiology 10:207–10.
Wächterhäuser, G.1992. “Groundworks for an Evolutionary Biochemistry: The Iron‐Sulfur World. Progress in Biophysics and Molecular Biology 58:85–201.
Wächterhäuser, G.1997. “The Origin of Life and Its Methodological Challenge. Journal of Theoretical Biology 187:483–94.
Waldrup, M. M.1992. Complexity: The Emerging Science at the Edge of Order and Chaos New York : Simon and Schuster.
Watson, J. D., and F C.Crick1953. “Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid. Nature 171:737–38.
Weber, Bruce H.1998. “Emergence of Life and Biological Selection from the Perspective of Complex Systems Dynamics .” In Evolutionary Systems: Biological and Epistemological Perspectives on Selection and Self‐Organization, ed. G.Van de Vijver, S. N.Salthe, and M.Delpos, 59–66. Dordrecht : Kluwer.
Weber, Bruce H.2000. “Closure in the emergence and evolution of life. Annals of the New York Academy of Sciences 901:132–38.
Weber, Bruce H.Forthcoming. Design and Its Discontents . Syntese. .
Weber, Bruce H., and TerrenceDeacon2000. “Thermodynamic Cycles, Developmental Systems, and Emergence. Cybernetics and Human Knowing 7:21–43.
Weber, Bruce H., and David J.Depew1996. “Natural selection and self‐organization: Dynamical models as clues to a new evolutionary synthesis. Biology and Philosophy 11:33–65.
Weber, Bruce H., and David J.Depew2004. “Darwinism, Design and Complex Systems Dynamics .” In Debating Design: From Darwin to DNA, ed. W. A.Dembski and M.Ruse, 173–90. Cambridge : Cambridge Univ. Press.
Weber, Bruce H., and J. N.Prebble2006. “An Issue of Originality and Priority: The Correspondence and Theories of Oxidative Phosphorylation of Peter Mitchell and Robert J. P. Williams, 1961–1980. Journal of the History of Biology 39: 125–63.
Westheimer, F H.1987. “Why Nature Chose Phosphates. Science 235:1173–78.
Wicken, J. S.1987. Evolution, Information and Thermodynamics: Extending the Darwinian Program New York : Oxford Univ. Press.
Williams, R. J. P.1961. “Possible Functions of Chains of Catalysts. Journal of Theoretical Biology 1:1–17.
Williams, R. J. P., and J. R. R.Fraústo da Silva1996. The Natural Selection of the Elements Oxford : Oxford Univ. Press.
Williams, R. J. P., and J. R. R.Fraústo da Silva1999. Bringing Chemistry to Life: From Matter to Man Oxford : Oxford Univ. Press.
Williams, R. J. P., and J. R. R.Fraústo da Silva2003. “Evolution was Chemically Constrained. Journal of Theoretical Biology 220:323–43.
Williams, R. J. P., and J. R. R.Fraústo da Silva2006. The Chemistry of Evolution Amsterdam : Elsevier.
Williams, R. J. P., and J. R. R.Fraústo da Silva Forthcoming. “Evolution Revisited by Inorganic Chemists .” In Fitness of the Cosmos for Life: Biochemistry and Fine‐Tuning, ed. J. D.Barrow, S.Conway Morris, S. J.Freeland, and C. L.HarperJr Cambridge : Cambridge Univ. Press.
Wills, Christopher, and JeffreyBada2000. The Spark of Life: Darwin and the Primeval Soup Cambridge , Mass. : Perseus.
Wilson, C., and J. W.Szostak1995. “In Vitro Evolution of a Self‐alkylating Ribozyme. Nature 374:777–82.
Woese, C.1967. “The Evolution of the Genetic Code .” In The Genetic Code, 179–95. New York : Harper and Row.
Yamagata, Y., and K.Inomata1997. “Condensation of glycylglycine to oligoclycines with trimetaphosphate in aqueous solution. Origins of Life and Evolution of the Biosphere 27:339–44.
Yockey, H. P.2005. Information Theory Evolution, and the Origin of Life Cambridge : Cambridge Univ. Press.